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Written by Fernando Amat   
Friday, 22 November 2013 14:50

Invited Lecturer

  • Computational Methods for Cell Lineage Reconstruction. EMBO Practical Course on Light Sheet Microscopy. Dresden, Germany, 2014.
  • Open-Source Software for Reconstruction and Analysis of Light Sheet Microscopy Datasets. Focus on Microscopy. Sidney, Australia, 2014.
  • Efficient Processing and Analysis of Large-Scale Light-Sheet Microscopy Datasets. Trends in Microscopy. Freiburg, Germany, 2014.
  • Probabilistic models for large-scale bioimage informatics. UMASS ECE. Amherst, USA, 2012.
  • Fundamentals of subtomogram averaging. NCCR Workshop on Subtomogram Averaging. Basel, Switzerland, 2012.
  • Multivariant and multidimensional data analysis. Courses @CRG: Summer Course Modeling for Systems Biology. Barcelona, Spain, 2012-2014.


Invited Talk

  • Efficient Processing and Analysis of Large-Scale Light-Sheet Microscopy Datasets. NIPS workshop. Montreal, Canada, 2014.
  • High-throughput image processing and cell lineage analysis pipeline for multi-view light sheet microscopy. The Krasnow Institute Seminar. Fairfax, USA, 2012.
  • High-throughput image processing and cell lineage analysis pipeline for multi-view light sheet microscopy. UNCC Bioinformatics Seminar Series. Charlotte, USA, 2012.
  • Raptor 2.0: Alignment of Electron Tomography Datsets with fiducial markers by maximum likelihood. Sixth International Congress on Electron Tomography. Heidelberg, Germany, 2011.


Oral Presentation

  • System-level cell lineaging in complex multicellular organisms. Fifth Light-Sheet Fluorescence Microscopy Workshop. New York, USA, 2013.
  • Gordon Research Conference on Three Dimensional Electron Microscopy. Lucca, Italy, 2010.
  • Structural Analysis of Caulobacter Crescentus CB15 S-layer by Cryo-Electron Tomography of Whole Cells. Asia-Pacific Congress on Electron Tomography. Brisbane, Australia, 2009.
  • Automated Tracking for Alignment of Electron Microscope Images. Tomography workshop. San Diego, USA, 2008.
  • Markov random field based automatic image alignment for electron tomography. Advances in Neural Information Processing Systems. Whistler, Canada, 2007.

 

Poster Presentation

 

Last Updated on Thursday, 06 November 2014 03:18